'''
Created on Aug 6, 2009

@author: mkiyer
'''

import sys
from chipseq.app.chipdiff import ChIPDiff
from veggie.io.bowtieparser import BowtieParser

if __name__ == '__main__':
    exper_name = sys.argv[1]
    treatment_file = sys.argv[2]
    control_file = sys.argv[3]
    parser = BowtieParser()
    # create the app controller
    chipdiff_app = ChIPDiff()
    # run on test data
    chipdiff_app.run(exper_name, parser, treatment_file, control_file)
